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HD-CTC DeepZoom Visualization Site

As part of the automated computational analysis, the images from each slide are represented in the form of a virtual slide using DeepZoom technology. Each HD-CTC can be examined in the context of the entire slide by zooming in or out arbitrarily. Additionally, high magnification reimaging is also integrated into the viewer.

HD-CTC DeepZoom Link >>


FRONTIERS IN SCIENCE:A series of lectures for donors and friends by scientists from The Scripps Research Institute on diseases, recent discoveries, and the application of knowledge to health care.

October 29th, 2009
Frontiers in Science was featuring Dr. Peter Kuhn who presented a lecture:

“Novel Approaches to Monitoring the Spread of Cancer Cells — Finding the Needle in the Haystack to Develop Specialized Treatments”

While cancer patients are benefiting substantially from the availability of more and more treatment choices, new approaches are needed to make treatment decisions that are applicable to each individual patient.

Metastasis, the major cause of mortality in patients with cancer, is caused by tumor cells that escape from the primary tumor into the bloodstream and travel through the circulation to distant sites where they develop into secondary tumors. The factors involved in circulating tumor cell (CTC) survival in the blood circulation and eventual metastases are not well understood. CTCs exist in the peripheral blood of cancer patients in low concentrations, making their isolation and identification a difficult task. It is like both finding a needle in a haystack and reading a book in a foreign language.

Scripps Research Associate Professor Peter Kuhn and his fellow biologists, physicists, and clinicians have developed a reliable way to detect and to characterize CTCs isolated from the blood of cancer patients, and are currently involved in multiple ongoing clinical trials. The messages contained in the cells that they are uncovering could aid physicians in better utilizing current therapies, as well as developing specialized treatments in the future. For details on Dr. Kuhn’s work, please visit http://cancer.scripps.edu.

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In collaboration with Interknowlogy, LLC (Carlsbad, CA) and support from Microsoft, Inc., we have developed and are further improving a software application C-ME to enable improve collaboration among scientists and foster a process of cancer diagnosis and prognosis.


Early detection of cancer and monitoring of cancer therapy are critical in increasing the chances of survival. The major cause of mortality in patients with cancer is metastasis. It is caused by tumor cells that escape from the primary tumor into the bloodstream and travel through the circulation to distant sites where they develop into secondary tumors. Although these circulating tumor cells (CTCs) provide a link between the primary tumor and metastatic sites, the factors involved in circulating tumor cell survival in the blood circulation and eventual metastases are not well understood.

CTCs exist in the peripheral blood of cancer patients in low concentrations, making their isolation and identification a difficult task. Our laboratory has developed a reliable way to detect and to characterize CTCs isolated from the blood of cancer patients.

We currently have multiple on-going clinical trials aimed to investigate the clinical utility of CTCs.

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Currently biomedical research leverages a combination of disjointed technologies to record data produced by and associated with that research. The result is that much of the data which researchers share is stored in stand-alone or disconnected systems. Over time the context used to discuss key concepts can be lost and in some cases the thoughts of scientists are not captured and retrievable. The Kuhn-Stevens laboratory at The Scripps Research Institute (TSRI) is looking to create an integrated system which brings together many different types of data and allows researchers to collaborate on this data in such a way that the researchers have easy access to historical data while still allowing them to add new research, external reference data and analysis to their project’s data store.

In collaboration with Interknowlogy, LLC (Carlsbad, CA) and support from Microsoft, Inc., we have developed and are further improving a software client named C-ME to enable improved collaboration among scientists. C-ME uses the latest Microsoft technologies, Vista, Office 2007 and Sharepoint 2007.

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  • Scripps Cancer Center Fellowships
  • High School Projects
  • International Student Exchange
  • Public Lectures